PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000314617
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YB
Protein Properties Length: 404aa    MW: 45868.6 Da    PI: 9.4248
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000314617genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB153.34.4e-48499297
          NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                   +eqd +lPianv+rimk++lP +akisk+ak+t+qec++ef+sfvt+easdkc++e+rkt+ngdd++wal+ lGf++y+++   yl+kyre+e++k
  MDP0000314617  4 QEQDGMLPIANVGRIMKQILPPRAKISKEAKQTMQECATEFLSFVTGEASDKCHKENRKTVNGDDICWALSALGFDNYAQATIRYLHKYREAERDK 99
                   69********************************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-454112IPR009072Histone-fold
SuperFamilySSF471138.22E-366113IPR009072Histone-fold
PfamPF008081.2E-241073IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.8E-153755No hitNo description
PRINTSPR006157.8E-155674No hitNo description
PRINTSPR006157.8E-157593No hitNo description
SMARTSM003430.008205221IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.488205220IPR001878Zinc finger, CCHC-type
PfamPF139764.8E-10316368IPR025724GAG-pre-integrase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MVDQEQDGML PIANVGRIMK QILPPRAKIS KEAKQTMQEC ATEFLSFVTG EASDKCHKEN  60
RKTVNGDDIC WALSALGFDN YAQATIRYLH KYREAERDKA AANNNQNTAD IKSYGGLQQI  120
RMKIIFRSHE LWDIVENDVE TSAKKDEELI GFKPQKNWKS KWKKGDNKPV NQAGKAVSTS  180
EGAKNPCIHC DKLHFGECWF KDKPRCHNCH KLGHIAKDCR GKKVEMGTGQ LIEVIGKGNL  240
AVETKMVKRY IKEVMLVPGL QENLFNVGQM MEHGCFLVFG GTTAAIYDDE SMSNLIAKVP  300
MKGNRSFPMR LQSGMQMALK ANVCQSSTLW HRRLGHLNLN SLKQLKEHDM MLGLPKLKMT  360
YEICKGCVFX XALQRCISKG SIMESYSSSR TYSLRYMWTY ANHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-36494292Transcription factor HapC (Eurofung)
4g92_B6e-36494292Transcription factor HapC (Eurofung)
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.18e-51nuclear factor Y, subunit B4